Sorry for the lack of updates, but work has been progressing. I've just submitted a new version with support for waypoints, buildings, and the warpgate research. I've also made quite a few other various tweaks and adjustments to various parts of the algorithm, I think part of which means it will be more likely to take warpgate research of its own accord.
There was a crash that a few people noticed and PM'd me about (thanks for that!) and I think I've fixed it now, so if you notice any more crashes please let me know.
Next on the agenda will be to implement the rest of the upgrades.
Please keep the feedback coming, and hopefully the future updates can happen a bit more regularly.
Edit: Figured I should probably provide a link to the download page